tf.keras.metrics.AUC

TensorFlow 1 version

View source on GitHub

Computes the approximate AUC (Area under the curve) via a Riemann sum.

Inherits From: Metric

tf.keras.metrics.AUC(
    num_thresholds=200, curve='ROC', summation_method='interpolation', name=None,
    dtype=None, thresholds=None
)

This metric creates four local variables, true_positives, true_negatives, false_positives and false_negatives that are used to compute the AUC. To discretize the AUC curve, a linearly spaced set of thresholds is used to compute pairs of recall and precision values. The area under the ROC-curve is therefore computed using the height of the recall values by the false positive rate, while the area under the PR-curve is the computed using the height of the precision values by the recall.

This value is ultimately returned as auc, an idempotent operation that computes the area under a discretized curve of precision versus recall values (computed using the aforementioned variables). The num_thresholds variable controls the degree of discretization with larger numbers of thresholds more closely approximating the true AUC. The quality of the approximation may vary dramatically depending on num_thresholds. The thresholds parameter can be used to manually specify thresholds which split the predictions more evenly.

For best results, predictions should be distributed approximately uniformly in the range [0, 1] and not peaked around 0 or 1. The quality of the AUC approximation may be poor if this is not the case. Setting summation_method to 'minoring' or 'majoring' can help quantify the error in the approximation by providing lower or upper bound estimate of the AUC.

If sample_weight is None, weights default to 1. Use sample_weight of 0 to mask values.

Usage:

m = tf.keras.metrics.AUC(num_thresholds=3)
m.update_state([0, 0, 1, 1], [0, 0.5, 0.3, 0.9])

# threshold values are [0 - 1e-7, 0.5, 1 + 1e-7]
# tp = [2, 1, 0], fp = [2, 0, 0], fn = [0, 1, 2], tn = [0, 2, 2]
# recall = [1, 0.5, 0], fp_rate = [1, 0, 0]
# auc = ((((1+0.5)/2)*(1-0))+ (((0.5+0)/2)*(0-0))) = 0.75

print('Final result: ', m.result().numpy())  # Final result: 0.75

Usage with tf.keras API:

model = tf.keras.Model(inputs, outputs)
model.compile('sgd', loss='mse', metrics=[tf.keras.metrics.AUC()])

Methods

interpolate_pr_auc

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interpolate_pr_auc()

Interpolation formula inspired by section 4 of Davis & Goadrich 2006.

https://www.biostat.wisc.edu/~page/rocpr.pdf

Note here we derive & use a closed formula not present in the paper as follows:

Precision = TP / (TP + FP) = TP / P

Modeling all of TP (true positive), FP (false positive) and their sum P = TP + FP (predicted positive) as varying linearly within each interval [A, B] between successive thresholds, we get

Precision slope = dTP / dP = (TP_B - TP_A) / (P_B - P_A) = (TP - TP_A) / (P - P_A) Precision = (TP_A + slope * (P - P_A)) / P

The area within the interval is (slope / total_pos_weight) times

int_A^B{Precision.dP} = int_A^B{(TP_A + slope * (P - P_A)) * dP / P} int_A^B{Precision.dP} = int_A^B{slope * dP + intercept * dP / P}

where intercept = TP_A - slope * P_A = TP_B - slope * P_B, resulting in

int_A^B{Precision.dP} = TP_B - TP_A + intercept * log(P_B / P_A)

Bringing back the factor (slope / total_pos_weight) we'd put aside, we get

slope * [dTP + intercept * log(P_B / P_A)] / total_pos_weight

where dTP == TP_B - TP_A.

Note that when P_A == 0 the above calculation simplifies into

int_A^B{Precision.dTP} = int_A^B{slope * dTP} = slope * (TP_B - TP_A)

which is really equivalent to imputing constant precision throughout the first bucket having >0 true positives.

reset_states

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reset_states()

Resets all of the metric state variables.

This function is called between epochs/steps, when a metric is evaluated during training.

result

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result()

Computes and returns the metric value tensor.

Result computation is an idempotent operation that simply calculates the metric value using the state variables.

update_state

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update_state(
    y_true, y_pred, sample_weight=None
)

Accumulates confusion matrix statistics.