tfa.metrics.MatthewsCorrelationCoefficient

Computes the Matthews Correlation Coefficient.

tfa.metrics.MatthewsCorrelationCoefficient(
    num_classes: tfa.types.FloatTensorLike,
    name: str = 'MatthewsCorrelationCoefficient',
    dtype: tfa.types.AcceptableDTypes = None,
    **kwargs
)

Used in the notebooks

Used in the tutorials

The statistic is also known as the phi coefficient. The Matthews correlation coefficient (MCC) is used in machine learning as a measure of the quality of binary and multiclass classifications. It takes into account true and false positives and negatives and is generally regarded as a balanced measure which can be used even if the classes are of very different sizes. The correlation coefficient value of MCC is between -1 and +1. A coefficient of +1 represents a perfect prediction, 0 an average random prediction and -1 an inverse prediction. The statistic is also known as the phi coefficient.

MCC = (TP * TN - FP * FN) / ((TP + FP) * (TP + FN) * (TN + FP) * (TN + FN))^(1/2)

num_classes Number of unique classes in the dataset.
name (Optional) String name of the metric instance.
dtype (Optional) Data type of the metric result.

Usage:

y_true = np.array([[0.0, 1.0], [0.0, 1.0], [0.0, 1.0], [1.0, 0.0]], dtype=np.float32)
y_pred = np.array([[0.0, 1.0], [1.0, 0.0], [0.0, 1.0], [0.0, 1.0]], dtype=np.float32)
metric = tfa.metrics.MatthewsCorrelationCoefficient(num_classes=2)
metric.update_state(y_true, y_pred)
result = metric.result()
result.numpy()
-0.33333334

activity_regularizer Optional regularizer function for the output of this layer.
compute_dtype The dtype of the layer's computations.

This is equivalent to Layer.dtype_policy.compute_dtype. Unless mixed precision is used, this is the same as Layer.dtype, the dtype of the weights.

Layers automatically cast their inputs to the compute dtype, which causes computations and the output to be in the compute dtype as well. This is done by the base Layer class in Layer.call, so you do not have to insert these casts if implementing your own layer.

Layers often perform certain internal computations in higher precision when compute_dtype is float16 or bfloat16 for numeric stability. The output will still typically be float16 or bfloat16 in such cases.

dtype The dtype of the layer weights.

This is equivalent to Layer.dtype_policy.variable_dtype. Unless mixed precision is used, this is the same as Layer.compute_dtype, the dtype of the layer's computations.

dtype_policy The dtype policy associated with this layer.

This is an instance of a tf.keras.mixed_precision.Policy.

dynamic Whether the layer is dynamic (eager-only); set in the constructor.
input Retrieves the input tensor(s) of a layer.

Only applicable if the layer has exactly one input, i.e. if it is connected to one incoming layer.

input_spec InputSpec instance(s) describing the input format for this layer.

When you create a layer subclass, you can set self.input_spec to enable the layer to run input compatibility checks when it is called. Consider a Conv2D layer: it can only be called on a single input tensor of rank 4. As such, you can set, in __init__():

self.input_spec = tf.keras.layers.InputSpec(ndim=4)

Now, if you try to call the layer on an input that isn't rank 4 (for instance, an input of shape (2,), it will raise a nicely-formatted error:

ValueError: Input 0 of layer conv2d is incompatible with the layer:
expected ndim=4, found ndim=1. Full shape received: [2]

Input checks that can be specified via input_spec include:

  • Structure (e.g. a single input, a list of 2 inputs, etc)
  • Shape
  • Rank (ndim)
  • Dtype

For more information, see tf.keras.layers.InputSpec.

losses List of losses added using the add_loss() API.

Variable regularization tensors are created when this property is accessed, so it is eager safe: accessing losses under a tf.GradientTape will propagate gradients back to the corresponding variables.

class MyLayer(tf.keras.layers.Layer):
  def call(self, inputs):
    self.add_loss(tf.abs(tf.reduce_mean(inputs)))
    return inputs
l = MyLayer()
l(np.ones((10, 1)))
l.losses
[1.0]
 
inputs = tf.keras.Input(shape=(10,))
x = tf.keras.layers.Dense(10)(inputs)
outputs = tf.keras.layers.Dense(1)(x)
model = tf.keras.Model(inputs, outputs)
# Activity regularization.
len(model.losses)
0
model.add_loss(tf.abs(tf.reduce_mean(x)))
len(model.losses)
1
 
inputs = tf.keras.Input(shape=(10,))
d = tf.keras.layers.Dense(10, kernel_initializer='ones')
x = d(inputs)
outputs = tf.keras.layers.Dense(1)(x)
model = tf.keras.Model(inputs, outputs)
# Weight regularization.
model.add_loss(lambda: tf.reduce_mean(d.kernel))
model.losses
[<tf.Tensor: shape=(), dtype=float32, numpy=1.0>]

metrics List of metrics added using the add_metric() API.

input = tf.keras.layers.Input(shape=(3,))
d = tf.keras.layers.Dense(2)
output = d(input)
d.add_metric(tf.reduce_max(output), name='max')
d.add_metric(tf.reduce_min(output), name='min')
[m.name for m in d.metrics]
['max', 'min']

name Name of the layer (string), set in the constructor.
name_scope Returns a tf.name_scope instance for this class.
non_trainable_weights List of all non-trainable weights tracked by this layer.

Non-trainable weights are not updated during training. They are expected to be updated manually in call().

output Retrieves the output tensor(s) of a layer.

Only applicable if the layer has exactly one output, i.e. if it is connected to one incoming layer.

submodules Sequence of all sub-modules.

Submodules are modules which are properties of this module, or found as properties of modules which are properties of this module (and so on).

a = tf.Module()
b = tf.Module()
c = tf.Module()
a.b = b
b.c = c
list(a.submodules) == [b, c]
True
list(b.submodules) == [c]
True
list(c.submodules) == []
True

supports_masking Whether this layer supports computing a mask using compute_mask.
trainable

trainable_weights List of all trainable weights tracked by this layer.

Trainable weights are updated via gradient descent during training.

variable_dtype Alias of Layer.dtype, the dtype of the weights.
weights Returns the list of all layer variables/weights.

Methods

add_loss

add_loss(
    losses, **kwargs
)

Add loss tensor(s), potentially dependent on layer inputs.

Some losses (for instance, activity regularization losses) may be dependent on the inputs passed when calling a layer. Hence, when reusing the same layer on different inputs a and b, some entries in layer.losses may be dependent on a and some on b. This method automatically keeps track of dependencies.

This method can be used inside a subclassed layer or model's call function, in which case losses should be a Tensor or list of Tensors.

Example:

class MyLayer(tf.keras.layers.Layer):
  def call(self, inputs):
    self.add_loss(tf.abs(tf.reduce_mean(inputs)))
    return inputs

The same code works in distributed training: the input to add_loss() is treated like a regularization loss and averaged across replicas by the training loop (both built-in Model.fit() and compliant custom training loops).

The add_loss method can also be called directly on a Functional Model during construction. In this case, any loss Tensors passed to this Model must be symbolic and be able to be traced back to the model's Inputs. These losses become part of the model's topology and are tracked in get_config.

Example:

inputs = tf.keras.Input(shape=(10,))
x = tf.keras.layers.Dense(10)(inputs)
outputs = tf.keras.layers.Dense(1)(x)
model = tf.keras.Model(inputs, outputs)
# Activity regularization.
model.add_loss(tf.abs(tf.reduce_mean(x)))

If this is not the case for your loss (if, for example, your loss references a Variable of one of the model's layers), you can wrap your loss in a zero-argument lambda. These losses are not tracked as part of the model's topology since they can't be serialized.

Example:

inputs = tf.keras.Input(shape=(10,))
d = tf.keras.layers.Dense(10)
x = d(inputs)
outputs = tf.keras.layers.Dense(1)(x)
model = tf.keras.Model(inputs, outputs)
# Weight regularization.
model.add_loss(lambda: tf.reduce_mean(d.kernel))

Args
losses Loss tensor, or list/tuple of tensors. Rather than tensors, losses may also be zero-argument callables which create a loss tensor.
**kwargs Used for backwards compatibility only.

add_metric

add_metric(
    value, name=None, **kwargs
)

Adds metric tensor to the layer.

This method can be used inside the call() method of a subclassed layer or model.

class MyMetricLayer(tf.keras.layers.Layer):
  def __init__(self):
    super(MyMetricLayer, self).__init__(name='my_metric_layer')
    self.mean = tf.keras.metrics.Mean(name='metric_1')

  def call(self, inputs):
    self.add_metric(self.mean(inputs))
    self.add_metric(tf.reduce_sum(inputs), name='metric_2')
    return inputs

This method can also be called directly on a Functional Model during construction. In this case, any tensor passed to this Model must be symbolic and be able to be traced back to the model's Inputs. These metrics become part of the model's topology and are tracked when you save the model via save().

inputs = tf.keras.Input(shape=(10,))
x = tf.keras.layers.Dense(10)(inputs)
outputs = tf.keras.layers.Dense(1)(x)
model = tf.keras.Model(inputs, outputs)
model.add_metric(math_ops.reduce_sum(x), name='metric_1')

inputs = tf.keras.Input(shape=(10,))
x = tf.keras.layers.Dense(10)(inputs)
outputs = tf.keras.layers.Dense(1)(x)
model = tf.keras.Model(inputs, outputs)
model.add_metric(tf.keras.metrics.Mean()(x), name='metric_1')

Args
value Metric tensor.
name String metric name.
**kwargs Additional keyword arguments for backward compatibility. Accepted values: aggregation - When the value tensor provided is not the result of calling a keras.Metric instance, it will be aggregated by default using a keras.Metric.Mean.

build

build(
    input_shape
)

Creates the variables of the layer (for subclass implementers).

This is a method that implementers of subclasses of Layer or Model can override if they need a state-creation step in-between layer instantiation and layer call. It is invoked automatically before the first execution of call().

This is typically used to create the weights of Layer subclasses (at the discretion of the subclass implementer).

Args
input_shape Instance of TensorShape, or list of instances of TensorShape if the layer expects a list of inputs (one instance per input).

build_from_config

build_from_config(
    config
)

compute_mask

compute_mask(
    inputs, mask=None
)

Computes an output mask tensor.

Args
inputs Tensor or list of tensors.
mask Tensor or list of tensors.

Returns
None or a tensor (or list of tensors, one per output tensor of the layer).

compute_output_shape

compute_output_shape(
    input_shape
)

Computes the output shape of the layer.

This method will cause the layer's state to be built, if that has not happened before. This requires that the layer will later be used with inputs that match the input shape provided here.

Args
input_shape Shape tuple (tuple of integers) or tf.TensorShape, or structure of shape tuples / tf.TensorShape instances (one per output tensor of the layer). Shape tuples can include None for free dimensions, instead of an integer.

Returns
A tf.TensorShape instance or structure of tf.TensorShape instances.

count_params

count_params()

Count the total number of scalars composing the weights.

Returns
An integer count.

Raises
ValueError if the layer isn't yet built (in which case its weights aren't yet defined).

from_config

@classmethod
from_config(
    config
)

Creates a layer from its config.

This method is the reverse of get_config, capable of instantiating the same layer from the config dictionary. It does not handle layer connectivity (handled by Network), nor weights (handled by set_weights).

Args
config A Python dictionary, typically the output of get_config.

Returns
A layer instance.

get_build_config

get_build_config()

get_config

View source

get_config()

Returns the serializable config of the metric.

get_weights

get_weights()

Returns the current weights of the layer, as NumPy arrays.

The weights of a layer represent the state of the layer. This function returns both trainable and non-trainable weight values associated with this layer as a list of NumPy arrays, which can in turn be used to load state into similarly parameterized layers.

For example, a Dense layer returns a list of two values: the kernel matrix and the bias vector. These can be used to set the weights of another Dense layer:

layer_a = tf.keras.layers.Dense(1,
  kernel_initializer=tf.constant_initializer(1.))
a_out = layer_a(tf.convert_to_tensor([[1., 2., 3.]]))
layer_a.get_weights()
[array([[1.],
       [1.],
       [1.]], dtype=float32), array([0.], dtype=float32)]
layer_b = tf.keras.layers.Dense(1,
  kernel_initializer=tf.constant_initializer(2.))
b_out = layer_b(tf.convert_to_tensor([[10., 20., 30.]]))
layer_b.get_weights()
[array([[2.],
       [2.],
       [2.]], dtype=float32), array([0.], dtype=float32)]
layer_b.set_weights(layer_a.get_weights())
layer_b.get_weights()
[array([[1.],
       [1.],
       [1.]], dtype=float32), array([0.], dtype=float32)]

Returns
Weights values as a list of NumPy arrays.

merge_state

merge_state(
    metrics
)

Merges the state from one or more metrics.

This method can be used by distributed systems to merge the state computed by different metric instances. Typically the state will be stored in the form of the metric's weights. For example, a tf.keras.metrics.Mean metric contains a list of two weight values: a total and a count. If there were two instances of a tf.keras.metrics.Accuracy that each independently aggregated partial state for an overall accuracy calculation, these two metric's states could be combined as follows:

m1 = tf.keras.metrics.Accuracy()
_ = m1.update_state([[1], [2]], [[0], [2]])
 
m2 = tf.keras.metrics.Accuracy()
_ = m2.update_state([[3], [4]], [[3], [4]])
 
m2.merge_state([m1])
m2.result().numpy()
0.75

Args
metrics an iterable of metrics. The metrics must have compatible state.

Raises
ValueError If the provided iterable does not contain metrics matching the metric's required specifications.

reset_state

View source

reset_state()

Resets all of the metric state variables.

reset_states

View source

reset_states()

result

View source

result()

Computes and returns the scalar metric value tensor or a dict of scalars.

Result computation is an idempotent operation that simply calculates the metric value using the state variables.

Returns
A scalar tensor, or a dictionary of scalar tensors.

set_weights

set_weights(
    weights
)

Sets the weights of the layer, from NumPy arrays.

The weights of a layer represent the state of the layer. This function sets the weight values from numpy arrays. The weight values should be passed in the order they are created by the layer. Note that the layer's weights must be instantiated before calling this function, by calling the layer.

For example, a Dense layer returns a list of two values: the kernel matrix and the bias vector. These can be used to set the weights of another Dense layer:

layer_a = tf.keras.layers.Dense(1,
  kernel_initializer=tf.constant_initializer(1.))
a_out = layer_a(tf.convert_to_tensor([[1., 2., 3.]]))
layer_a.get_weights()
[array([[1.],
       [1.],
       [1.]], dtype=float32), array([0.], dtype=float32)]
layer_b = tf.keras.layers.Dense(1,
  kernel_initializer=tf.constant_initializer(2.))
b_out = layer_b(tf.convert_to_tensor([[10., 20., 30.]]))
layer_b.get_weights()
[array([[2.],
       [2.],
       [2.]], dtype=float32), array([0.], dtype=float32)]
layer_b.set_weights(layer_a.get_weights())
layer_b.get_weights()
[array([[1.],
       [1.],
       [1.]], dtype=float32), array([0.], dtype=float32)]

Args
weights a list of NumPy arrays. The number of arrays and their shape must match number of the dimensions of the weights of the layer (i.e. it should match the output of get_weights).

Raises
ValueError If the provided weights list does not match the layer's specifications.

update_state

View source

update_state(
    y_true, y_pred, sample_weight=None
)

Accumulates statistics for the metric.

Args
*args

**kwargs A mini-batch of inputs to the Metric.

with_name_scope

@classmethod
with_name_scope(
    method
)

Decorator to automatically enter the module name scope.

class MyModule(tf.Module):
  @tf.Module.with_name_scope
  def __call__(self, x):
    if not hasattr(self, 'w'):
      self.w = tf.Variable(tf.random.normal([x.shape[1], 3]))
    return tf.matmul(x, self.w)

Using the above module would produce tf.Variables and tf.Tensors whose names included the module name:

mod = MyModule()
mod(tf.ones([1, 2]))
<tf.Tensor: shape=(1, 3), dtype=float32, numpy=..., dtype=float32)>
mod.w
<tf.Variable 'my_module/Variable:0' shape=(2, 3) dtype=float32,
numpy=..., dtype=float32)>

Args
method The method to wrap.

Returns
The original method wrapped such that it enters the module's name scope.

__call__

__call__(
    *args, **kwargs
)

Accumulates statistics and then computes metric result value.

Args
*args

**kwargs A mini-batch of inputs to the Metric, passed on to update_state().

Returns
The metric value tensor.